Dartmouth Genomic Data Science Core: General Utilities
[!WARNING] 🚧 In development:
This package currently supports single-cell differential expression analysis, ORA analysis, and pathway network analysis.
Installation
# Install from github
devtools::install_github("https://github.com/Dartmouth-Data-Analytics-Core/GDSCtools")Dependencies
CRAN: igraph, dplyr, ggplot2, ggwordcloud, patchwork, scales, stringr
Bioconductor: Seurat, clusterProfiler, org.Mm.eg.db (or org.Hs.eg.db)
Install Bioconductor dependencies first if needed:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install(c("clusterProfiler", "org.Mm.eg.db"))