Package index • GDSCtools

All functions

build_network_inputs(): Build Network Input Data from GO Enrichment and DE Results

generate_overlap_network(): Generate a Jaccard-Overlap Network of GO Terms with Leiden Clustering

mergeMetadata(): mergeMetadata

qcScatter(): QC Scatter Plot with Marginal Densities

read_10x_GEX(): Read a 10x Genomics Gene Expression Sample into a Seurat Object

run_cluster_de(): Run Cluster-Specific Differential Expression Analysis

run_comparison_networks(): Run GO-ORA Overlap Networks for All Clusters in a Comparison

run_go_ora(): Run Gene Ontology Over-Representation Analysis on Multiple DEG Sets

write_cluster_results(): Extract and Export GO Terms from a Specific Leiden Cluster

write_cluster_wordclouds_patchwork(): Generate Patchwork Word Clouds for All Leiden Clusters

write_de_results(): Write Differential Expression or GO-ORA Results to CSV Files